• Motivation

• PPforest, Projection pursuit random forest

• Visually exploring a PPforest object

• Final comments

• Supervise learning: objective is to predict a categorical variable then it is a classification problem (two class or multiclass problem)

• PPforest is a new supervised method based on bagged projection pursuit trees for classification problems.

• This method improves the predictive performance when the separation between classes is in combinations of variables.

Black box model, having better tools to open up black box models will provide for better understanding the data, the model strengths and weaknesses, and how the model will performs on future data.

• Ensembles learning methods: combined multiple individual models trained independently to build a prediction model.

• Some well known examples of ensemble learning methods are, boosting (Schapire 1990), bagging (Breiman 1996) and random forest (Breiman 2001) among others.

• Main differences between ensembles, type of individual models to be combined and the ways these individual models are combined.

PPforest is an ensemble learning method, built on bagged trees.

Main concepts:

• Bootstrap aggregation (Breiman (1996) and Breiman and others (1996))

• Random feature selection (Amit and Geman (1997) and Ho (1998)) to individual classification trees for prediction.

The individual classifier in PPforest is a PPtree (Lee et al. 2005).

The splits in PPforest are based on a linear combination of randomly chosen variables. Utilizing linear combinations of variables the individual model (PPtree) separates classes taking into account the correlation between variables.

PPtree combines tree structure methods with projection pursuit dimension reduction. PPtree treats the data always as a two-class system.

When the classes are more than two the algorithm uses a two step projection pursuits optimization in every node split.

• PPforest is on CRAN

• Initial version was develop entirely in R, not fast enought

• Two code optimization strategies were employed:
  • translate the main functions to Rcpp
  • parallelization

• OOB Error rate

• Variable importance

• Proximity matrix

• Vote matrix

Structuring data and constructing plots to explore forest classification models interactively.

We proposed a method to explore and diagnostic ensemble classifiers based on three levels of analysis:

1. Individual cases (Observations)
2. Individual models (Trees)
3. Performance comparison (PPF vs RF)

Key part of the visualization is the use of interactive visualization methods.

Interactive web-based visualization of the ensemble methods.

Two key components that an interactive graphic should accomplish:

• Interactions in each visualization
• Links between different graphics

Why we should use interactive visualizations?

To see connections inside each level that cannot be seen in a static graphs.

• Links at case level allows to identify cases where the model is not working properly and allows to characterize this case base on the original data.

• Also we can identify individual models in the ensemble that are not good enough and why this is happening.

• The last level of analysis focused on model comparison based on predicted performance by class.

159 fishes of 7 species (Bream, Parkki, Perch, Pike, Roach, Smelt and Whitewish) are caught and measured, 6 variables.

1. Having better tools to open up black box models will provide for better understanding the data, the model strengths and weaknesses, and how the model will performs on future data.

2. This visualisation app provides a selection of interactive plots to diagnose PPF models.

3. This shell could be used to make an app for other ensemble classifiers.

4. Combining shiny, ggplot2 and plotly we can develop informative interactive visualizations

1. PPforest package:https://cran.r-project.org/web/packages/PPforest/index.html
2. Slides:https://github.com/natydasilva/user2018
3. Viz: https://natydasilva.shinyapps.io/shinyppforest/
4. webpage: http://natydasilva.com
5. email: natalia@iesta.edu.uy twitter:@pacocuak